User guide for running bioinformatics analysis on Tufts HPC
This is the user guide for running bioinformatics analysis on Tufts High Performance Computing clusters.
If you have any question, contact me (Yucheng Zhang).
Tutorials
Bioinformatics applications
- Alphafold
- Angsd
- Bcftools
- Bedops
- Bedtools
- Biobakery_workflows
- Blast
- Bowtie2
- Busco
- Canu
- Cellranger
- Cellranger-atac
- Cufflinks
- Cutadapt
- Diamond
- Fasta3
- Fastp
- Fastqc
- Fastspar
- Filtlong
- Flye
- Gatk4
- Hisat2
- Hmmer
- Htseq
- Impute2
- Kallisto
- Macs2
- Macs3
- Masurca
- Medaka
- Megahit
- Miniasm
- Minipolish
- Orthofinder
- Picard
- Plink
- Plink2
- Polypolish
- Qiime2
- Raven-assembler
- Rmats2sashimiplot
- Salmon
- Samtools
- Signalp6
- Spades
- Star
- Subread
- Trim-galore
- Trimmomatic
- Trinity
- Trycycler